Installation

Base installation

pip install scCS-py

RNA velocity

pip install "scCS-py[velocity]"

All optional analysis features

pip install "scCS-py[all]"

Development and documentation

pip install -e ".[dev]"

The future-fate solver uses the transition matrix already present in the AnnData object or a transition matrix supplied directly. scVelo is needed only when scCS is asked to obtain or calculate RNA-velocity quantities itself.