Index A | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U | V | W A aligned_directional_entropy (scCS.FurcationScoreResult property) anchor_diagnostics_frame() (scCS.FutureFateScoreResult method) B build_embedding() (scCS.SingleScorer method) build_scoring_embedding() (in module scCS) C canonicalize_transition_matrix() (in module scCS) commitment_contribution (scCS.FutureFateScoreResult property) commitment_entropy (scCS.FurcationScoreResult property) commitment_strength (scCS.FutureFateScoreResult property) compare_conditions() (scCS.PairScorer method) compare_contrast() (scCS.MultiScorer method) compare_omnibus() (scCS.MultiScorer method) compare_posthoc() (scCS.MultiScorer method) compute_delta_CS() (scCS.PairScorer method) compute_velocity() (scCS.SingleScorer method) compute_velocity_pseudotime() (scCS.SingleScorer method) conditional_fate_affinity (scCS.FutureFateScoreResult property) cosine_softmax_affinity() (in module scCS) D directional_affinity (scCS.FutureFateScoreResult property) directional_entropy (scCS.FurcationScoreResult property) directional_specificity (scCS.FurcationScoreResult property) discounted_fate_reach (scCS.FutureFateScoreResult property) DiscountedOutcomeSolution (class in scCS) display_velocity_projection() (scCS.SingleScorer method) E embedding (scCS.SingleScorer property) F fate_cosine_similarity (scCS.FurcationScoreResult property) fit() (scCS.SingleScorer method) fit_future_fate() (scCS.SingleScorer method) fit_mixed_model() (scCS.MultiScorer method) (scCS.PairScorer method) Furcation (class in scCS) FurcationOrderingScaler (class in scCS) FurcationScoreResult (class in scCS) FutureFateScoreResult (class in scCS) G get_commitment_associated_genes() (scCS.SingleScorer method) get_fate_markers() (scCS.SingleScorer method) I is_fitted (scCS.SingleScorer property) L load() (scCS.SingleScorer class method) load_velocity_vectors() (scCS.SingleScorer method) M masks() (scCS.Furcation method) maximum_conditions (scCS.MultiScorer attribute) (scCS.PairScorer attribute) minimum_conditions (scCS.MultiScorer attribute) (scCS.PairScorer attribute) MultiScorer (class in scCS) N n_cells (scCS.FurcationScoreResult property) n_root (scCS.FurcationScoreResult property) n_terminal (scCS.FurcationScoreResult property) nearest_fate_angle_degrees (scCS.FurcationScoreResult property) P PairScorer (class in scCS) plot_affinity_distributions() (scCS.PairScorer method) plot_branch_velocity_profiles() (scCS.SingleScorer method) plot_commitment_bar() (scCS.SingleScorer method) plot_commitment_decomposition() (scCS.PairScorer method) plot_commitment_heatmap() (scCS.SingleScorer method) plot_delta_CS_heatmap() (scCS.PairScorer method) plot_delta_cs_heatmap() (scCS.PairScorer method) plot_direction_strength_map() (scCS.SingleScorer method) plot_effects() (scCS.PairScorer method) plot_expression_trends() (scCS.SingleScorer method) plot_gene_expression_star() (scCS.SingleScorer method) plot_omnibus_summary() (scCS.MultiScorer method) plot_pairwise_cs() (scCS.SingleScorer method) plot_pairwise_delta_grid() (scCS.MultiScorer method) plot_population_commitment() (scCS.SingleScorer method) plot_posthoc_heatmap() (scCS.MultiScorer method) plot_projection_geometry_diagnostics() (scCS.SingleScorer method) plot_replicate_outcomes() (scCS.PairScorer method) plot_root_progression_direction_diagnostics() (scCS.SingleScorer method) plot_rose() (scCS.SingleScorer method) plot_star() (scCS.SingleScorer method) plot_star_panels() (scCS.SingleScorer method) plot_subset_comparison() (scCS.SingleScorer method) plot_velocity_embedding_grid() (scCS.SingleScorer method) plot_velocity_star() (scCS.SingleScorer method) preflight() (scCS.SingleScorer method) prepare_scvelo_star_embedding() (scCS.SingleScorer method) project_transition_velocity() (in module scCS) project_velocity() (scCS.SingleScorer method) projected_velocity (scCS.SingleScorer property) projection_geometry_diagnostics() (scCS.SingleScorer method) R resolved_commitment (scCS.FutureFateScoreResult property) result (scCS.SingleScorer property) root_name (scCS.Furcation property) root_progression_direction_diagnostics() (scCS.SingleScorer method) S save() (scCS.SingleScorer method) score() (scCS.SingleScorer method) score_future_fate() (in module scCS) score_per_subset() (scCS.SingleScorer method) scoring_mode (scCS.SingleScorer property) selected_path_coverage (scCS.FutureFateScoreResult property) signed_ordering_flux (scCS.FutureFateScoreResult property) signed_progression (scCS.FutureFateScoreResult property) SingleScorer (class in scCS) solve_discounted_outcomes() (in module scCS) summarize() (scCS.FurcationScoreResult method) summary() (scCS.FurcationScoreResult method) T trajectory_shift() (scCS.PairScorer method) transfer_labels() (scCS.SingleScorer method) U unresolved_future_probability (scCS.FutureFateScoreResult property) V validate_adata() (scCS.Furcation method) validate_labels() (scCS.Furcation method) W write_to_adata() (scCS.FurcationScoreResult method) (scCS.FutureFateScoreResult method)