Contents Menu Expand Light mode Dark mode Auto light/dark, in light mode Auto light/dark, in dark mode Skip to content
scCS v.0.8
Logo
scCS v.0.8

Getting started

  • Introduction
  • Installation
  • Quick start
  • Core concepts
  • Terminology

Mathematical and methodological foundations

  • Mathematical framework
  • Metrics and semantics
  • Method selection
  • Validation evidence

Analysis practice

  • Diagnostics
  • Condition inference
  • Downstream analysis
  • Scalability
  • Limitations

Tutorials

  • Single-condition analysis
    • Pancreas SingleScorer tutorial
    • RegVelo Schwann SingleScorer tutorial
  • Two-condition analysis with PairScorer
    • Pancreas PairScorer tutorial
    • RegVelo Schwann PairScorer tutorial
  • Multi-condition analysis with MultiScorer
    • Pancreas MultiScorer tutorial
    • RegVelo Schwann MultiScorer tutorial
  • Methodological tutorials
    • Method selection: Discounted Future-Fate Propagation
    • Complex branches: turns, loops, retrograde motion, and mixed futures
    • Package-backed method decision: pancreas and RegVelo Schwann
  • Downstream analysis
    • Pancreas downstream analysis after DFFP scoring
    • RegVelo Schwann downstream analysis after DFFP scoring
  • Scalability
    • scCS scalability: single-process, in-memory, and no chunking

Reference

  • API reference
  • Changelog
  • References and software context
Back to top
View this page

Downstream analysisΒΆ

These tutorials connect scCS metrics to gene expression, candidate-gene association, fate markers, enrichment, developmental strata, and reproducible export.

  • Pancreas downstream analysis after DFFP scoring
  • RegVelo Schwann downstream analysis after DFFP scoring
Next
Pancreas downstream analysis after DFFP scoring
Previous
Package-backed method decision: pancreas and RegVelo Schwann
Copyright © 2026, Emil Kriukov
Made with Sphinx and @pradyunsg's Furo