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scCS v.0.8
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scCS v.0.8

Getting started

  • Introduction
  • Installation
  • Quick start
  • Core concepts
  • Terminology

Mathematical and methodological foundations

  • Mathematical framework
  • Metrics and semantics
  • Method selection
  • Validation evidence

Analysis practice

  • Diagnostics
  • Condition inference
  • Downstream analysis
  • Scalability
  • Limitations

Tutorials

  • Single-condition analysis
    • Pancreas SingleScorer tutorial
    • RegVelo Schwann SingleScorer tutorial
  • Two-condition analysis with PairScorer
    • Pancreas PairScorer tutorial
    • RegVelo Schwann PairScorer tutorial
  • Multi-condition analysis with MultiScorer
    • Pancreas MultiScorer tutorial
    • RegVelo Schwann MultiScorer tutorial
  • Methodological tutorials
    • Method selection: Discounted Future-Fate Propagation
    • Complex branches: turns, loops, retrograde motion, and mixed futures
    • Package-backed method decision: pancreas and RegVelo Schwann
  • Downstream analysis
    • Pancreas downstream analysis after DFFP scoring
    • RegVelo Schwann downstream analysis after DFFP scoring
  • Scalability
    • scCS scalability: single-process, in-memory, and no chunking

Reference

  • API reference
  • Changelog
  • References and software context
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ScalabilityΒΆ

This tutorial measures complete, in-memory scCS calculations without replacing the scientific workflow with chunked scoring.

  • scCS scalability: single-process, in-memory, and no chunking
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scCS scalability: single-process, in-memory, and no chunking
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RegVelo Schwann downstream analysis after DFFP scoring
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