scCS v.0.8ΒΆ

scCS quantifies supervised cell-fate commitment at a manually annotated furcation. It combines an RNA-velocity transition graph, a continuous ordering, and user-supplied root and fate annotations while keeping scientific dynamics separate from the standardized root-plus-star display.

New users should begin with Introduction, then follow Quick start and one of the complete pancreas or Schwann tutorials.

Getting started

Mathematical and methodological foundations

Analysis practice

Tutorials

Reference